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Mace never stopped doubting young Skywalker, and his ill-concealed distrust would cast a shadow over their relationship as Anakin ascended the Jedi ranks.

As the Separatist crisis engulfed the galaxy, Mace warned Chancellor Palpatine that the Jedi were too few to defend the Republic in case of war. Mace struck down the bounty hunter Jango Fett , but the Separatist hordes overwhelmed his forces.

Mace refused to surrender, and only the arrival of Yoda and the clone army prevented his death in battle. Mace spent much of the Clone Wars on Coruscant , directing the Jedi in their perilous role of wartime leaders. Mace was quick to punish Jedi who failed to follow orders, reassigning rebellious Padawans such as Ahsoka Tano to mundane duties that allowed them time to reflect on their mistakes.

As the war continued, Mace came increasingly to distrust Palpatine -- though he never guessed that the Supreme Chancellor was in fact the Sith Lord Darth Sidious. He agreed that if Palpatine failed to surrender his wartime powers after the death of the Separatists' General Grievous , the Jedi should remove the Supreme Chancellor from office and take control of the Senate.

Sidious then blasted Mace with Force lightning , sending the great Jedi champion plummeting to his death. Skip Navigation Disney. During the fighting, the Jedi realized that the droids were mining the planet for its energy resources, the amount of which could turn the war in the Separatists' favor. Ultimately, a cave in separated the team in half, with Windu and Mano on the surface, while Fisto and Dibs were trapped below.

Together, Windu and Mano defeated the droids on the surface and succeeded in destroying one of the Separatist harvesters. Afterward, they returned to their ship to regroup with Fisto and Dibs. At that point, Windu had determined that it would not be possible for his team to put an end to the Separatist operation one skirmish at a time, and therefore desired to locate the enemy's command center in order to bring the conflict on Hissrich to a swift and decisive conclusion.

Windu defeated Prosset Dibs, who was tried and found guilty of treason by the High Council. The Jedi's mission on Hissrich was interrupted by a fallout that occurred between two of its members. Dibs confronted Windu soon after returning to the Westwind with Fisto; his doubts about their military role and the loss of multiple natives led him to lose faith in the Order and the High Council. Shouting at his fellow Jedi Master, Dibs made several accusations against both Windu and the Council, ranging from callousness towards collateral damage to distorting the Jedi doctrine.

He then physically assaulted Windu, causing the High Council member to chastise Dibs for attacking his general. Although Windu sympathized with Dibs' frustrations, he refused to entertain his claims, dismissing all of them as "bold accusations" and "grand inquisitions. Realizing that Dibs would not back down, Windu declared that he had failed in his responsibility to keep Dibs on the Jedi path.

He then accepted Dibs' challenge by igniting his own lightsaber. Despite Dibs' resolve to kill Windu, he was ultimately disarmed and bested by the Jedi champion. The ordeal served to remind Windu of his mission on Mathas years prior to the Clone Wars, in which he was tempted to take the life of the false prophet Drooz. Recalling his past experience with deciding another person's fate, Windu decided to arrest Dibs and to leave his punishment to the will of the High Council.

After securing Dibs on the Westwind , the remaining Jedi proceeded to bring their mission to an end by attacking the AD-W4's headquarters. Although his own faith was tested during the duel, Dibs' accusations ultimately strengthened Windu's resolve and his belief that the Jedi Order existed to protect people from the malevolence of the dark side. Windu fought AD-W4 in single combat and ultimately destroyed the droid mercenary.

While Fisto created a distraction by confronting the battle droids, his comrades executed their respective parts of the mission, with Mano infiltrating a Separatist supply ship and Windu challenging AD-W4 to single combat. As they fought, the droid mercenary attempted to bait Windu by accusing him of hypocrisy as well as secretly enjoying his newfound authority as a general in the Grand Army of the Republic.

Although it briefly overpowered the Jedi Master, Windu ultimately prevailed, using both his Force powers and lightsaber to defeat AD-W4. He also rejected its claims against him, asserting that his virtues were influenced by altruism and the concept of right versus wrong. AD-W4 was confident that its mission was a success in spite of the Jedi's efforts to prevent the Separatists from gaining a valuable energy source that could fuel their war effort against the Republic.

However, Windu had anticipated the supply ship's purpose and instructed Mano to destroy it; the young Jedi Knight succeeded in her task—destroying the ship along with its flora samples—and moved to assist Fisto against the remaining droids in accordance with Windu's orders. Having failed in its mission, AD-W4 attempted to escape by disconnecting its head from its disabled body. The effort was in vain as Windu used the Force to cause the head to explode, destroying AD-W4 and ending the Separatist operation on Hissrich.

Returning to the Jedi Temple on Coruscant, Windu provided a report on the success of his team's mission to the High Council. The leaders of the Jedi Order decided to send a force of clone troopers to Hissrich, both to eliminate the remaining droids and provide aid to the planet's indigenous population. In addition to their plans for replanting and reconstruction on Hissrich, Yoda announced that they would study samples of the flora in order to learn more about its properties.

The next item on their agenda was the trial of Prosset Dibs, who remained under arrest as a result of his conduct during the Hissrich operation. Dibs, who turned against his team and attacked Windu—a Jedi Master as well as a general in the Republic military—stood before the leaders of the Jedi Order accused of heresy and insubordination. He was ultimately found guilty on both charges, including treason , but although Dibs expected to be put to death, Windu implored his colleagues to be merciful.

Windu, who harbored his own reservations against the Jedi's new military responsibilities, [9] sympathized with Dibs' frustrations. In Windu's view, Dibs did not deserve to be faulted for feeling anger and confusion, both of which Windu regarded as valid emotions under the circumstances of war.

As such, he believed that the Jedi had a duty to help rehabilitate the members of the Order who strayed from the light. Although Dibs continued to doubt Windu's sincerity, Windu requested for the prisoner to be placed on probation, confined to work in the Jedi Archives where he hoped Dibs would reevaluate his opinions. After the trial, Windu confessed to Mano his hope for reconciliation between Dibs and the Council, having sensed that the Order would need every Jedi as they faced their greatest challenge yet—a long war filled with trials and hardships.

While he continued to yearn for a quick end to the fighting, Windu felt that it was not an attainable goal at the moment. The best that the Jedi Order could do, he believed, was to keep faith in the Force and stand in defense of not only the citizens of the Republic, but all peoples of the galaxy.

During the Clone Wars, General Windu became a renowned warrior due to his forays onto the battlefield. During the early phase of the war, Rotta —the Huttlet son of Jabba Desilijic Tiure —was "Huttnapped" [29] by the Separatists, [27] who conspired to discredit the Jedi Knights in order to prevent a potential alliance between the Republic and the Hutt Clan.

Although Palpatine was quick to use this turn of events in the Republic's favor, Windu urged the chancellor to proceed with caution, believing there was more to the Huttlet's abduction than what was apparent. He also informed the chancellor that, because of the Separatist general Grievous , Republic forces were stretched too thin to send a large number of Jedi on a rescue mission. Due to Palpatine's insistence that the Republic clone army needed to gain safe passage through the Outer Rim Hyperspace routes in Hutt Space , Windu agreed to assign the mission to Obi-Wan Kenobi and Anakin Skywalker since both Jedi Knights were now available after liberating the planet Christophsis from Separatist occupation.

At the chancellor's request, Windu dispatched Kenobi and Skywalker on a mission to save Jabba's son. Soon afterward Windu received a message from the Advanced Recon Force Scout Troopers who tracked Rotta's location to an old monastery on the planet Teth. Due to the monastery's heavy fortification, Windu instructed the troopers to stand by and await Republic reinforcements. He then reassigned three of Admiral Wurtz 's cruisers to the rescue operation.

The Separatists were defeated on Teth and Jabba was made aware of Dooku's conspiracy, which in turn allowed the Republic to secure passage through the Hyperspace lanes in Hutt territory.

Following the Separatist invasion of the planet Ryloth , the Jedi generals Windu, Kenobi and Yoda asked Senator Bail Organa to negotiate with King Katuunko of Toydaria , hoping to gain his planet's support as a staging area for the delivery of relief supplies to the Twi'lek people. In response to the Republic's imminent counterattack, Wat Tambor — foreman of the Techno Union and Separatist emir of Ryloth—ordered the Confederacy navy to form a blockade around the planet.

As such, Windu entrusted Skywalker and Tano with the responsibility of breaking through the blockade in order to clear a path for the rest of the Republic invasion force. After some difficulty, Master and Padawan succeeded in their task, allowing Windu and Kenobi to commence with the landing of their ground forces on Ryloth.

In order to establish a foothold on Ryloth, Windu instructed Kenobi to lead a detachment of the th Attack Battalion on a mission to secure the landing area near the city of Nabat. On Tambor's orders, however, the Separatist battle droids used the local Twi'lek population as living shields to protect their proton cannons. Despite the danger that the cannons posed to the Republic Navy , Windu informed Kenobi that freeing the hostages was a mission priority.

After the success of Kenobi's assignment, Windu and his forces landed on the surface of Ryloth and proceeded with the final phase of the campaign—the liberation of the planetary capital city, Lessu. The liberation of Ryloth moved apace, but the march to the capital was perilous. After sustaining casualties and damage to his All Terrain Tactical Enforcers , Windu decided to enlist the aid of Cham Syndulla , the leader of the local resistance against Separatist occupation. Syndulla was hesitant to align his cause with that of the Republic, fearing Ryloth would only trade one oppressing force for another.

Yet the suffering of his people compelled him to communicate with Ryloth's own senator, Orn Free Taa. In return, Syndulla promised to not use his popularity with the people to seize power from Ryloth's democratically-elected senator. After claiming victory on Ryloth, Windu attended a parade where the Twi'leks celebrated the liberation of their homeworld. The combined forces of Republic clone troopers and Twi'lek freedom fighters laid siege to Lessu, which Tambor was in the process of evacuating, but not without confiscating much of Ryloth's wealth.

The attack on the capital was led by both Syndulla and Windu, until the latter broke off from the main fighting in order to prevent Tambor's escape. As a result of the emir's delayed departure, Tambor was left stranded on Ryloth, allowing Windu to capture him at saber-point.

Several Separatist bombers made a last ditch attempt to bombard the capital, but their efforts ended in failure as Skywalker and Tano narrowly intercepted and destroyed the enemy starfighters in their respective Delta-7 Aethersprite-class light interceptors. With the liberation of Lessu and the capture of the Skakoan emir, the campaign concluded in victory for both the Republic and Ryloth. Many Twi'leks gathered in the capital to celebrate their renewed liberty as clone troopers and freedom fighters marched through the city in a triumphant parade.

Sometime after Ryloth campaign, Windu was stationed on Ryloth. During this time, he saved Neesha Tor —a Twi'lek orphan who was treated like street trash. Using the Force, he pulled her to safety after she fell from a cliff. Todo entered the communication center where he briefly encountered several Jedi Knights, including Yoda and Windu.

In the aftermath of the Confederate victory on the planet Felucia , Windu and the Jedi Council reprimanded Tano for her failure to immediately comply with the order to withdraw from the battle.

As punishment, they temporarily reassigned her to serve as a guard in the Jedi Archives of the Temple. When Tano asked how long she would be on guard duty, Windu coldly responded by extending the punishment. Shortly afterward, Windu and Yoda discovered that the Temple had been infiltrated by thieves—unknown to the Jedi, Darth Sidious hired the bounty hunter Cad Bane for an assignment to steal one of the Order's holocrons. As Kenobi and Skywalker hunted the intruders, Bane sacrificed his droid, Todo , by sending it to the communication center as a bomb.

Before the droid could detonate, Windu Force pushed Todo into the ventilation system where it exploded. The distraction worked to Bane's advantage, allowing the mercenary to escape the Temple with a holocron.

However, Tano managed to apprehend his partner, Cato Parasitti , who revealed to Windu and the other Jedi that Bane's next target was Bolla Ropal , the keeper of the Kyber memory crystal. Windu deduced the true nature of the theft—the holocron that Bane stole could be used to access the crystal 's data, which contained the names and locations of all known Force-sensitive children in the galaxy.

Skywalker and Tano were unsuccessful in their mission to thwart Bane's theft of the crystal. Knowing that the bounty hunter's next move was to abduct the Force-sensitive children, the Jedi switched to a new tactic— meditation. Windu, Yoda, Kenobi and Skywalker searched through the Force, seeking to identify the children who were in immediate danger from Bane.

The Force guided the Jedi to the planets Rodia and Naboo. Windu personally conducted Bane's interrogation, although initially without success as he sensed that the mercenary's fear of his client outweighed his fear of the Jedi Order. At Tano's suggestion, Windu, Kenobi and Skywalker simultaneously performed the mind trick technique on Bane. Despite the possibility of permanently damaging Bane's mind in the process, the Jedi felt that he had given them no other recourse except to force his compliance for the sake of the Order's future.

The experience proved too painful for Bane, who finally relented to the Jedi's demands. The Jedi inadvertently trigger the station's defense turrets , however, allowing Bane to leave the space station in an escape pod while Windu and Kenobi defended themselves. Both Jedi Masters ultimately survived the trap and escaped with the holocron just prior to the station's destruction.

Simultaneously, Skywalker and Tano tracked the missing infants to the planet Mustafar and were able to rescue them all before they could be used in the schemes of the Dark Lord of the Sith. Windu and his forces discovered the Zillo Beast shortly after the Battle of Malastare. When the Separatists invaded the planet Malastare , homeworld of the Dug species, Windu again took to the field commanding Republic forces with the assistance of Commander Ponds and General Skywalker. Preventing the Separatist conquest of Malastare was not their only objective; the Republic sought to gain access to Malastarian fuel.

Doge Nakha Urus , leader of Malastare, agreed to sign a treaty of trade between the Republic and Malastare, provided that the Separatists were first driven off of Malastarian soil by Windu's forces. However, the Republic soon found itself heavily outnumbered upon confronting the Separatist invasion force on the open field of battle. Despite this, the Republic had a backup plan—the electro-proton bomb , developed by the Republic scientist Doctor Sionver Boll , was designed to neutralize a specific target: the Separatist battle droids.

The doctor assured Windu and Chancellor Palpatine—who communicated with Republic forces via hologram —that the bomb posed no threat to organic-based units, such as clone troopers and the Malastarian Dugs.

The plan met with the Chancellor's approval, but did little to assuage Windu's concerns. Although the Jedi Master proposed to seek an alternative solution, the bomb's use was authorized by Palpatine and Urus. Upon detonation, the immediate blast incinerated the droids that were closest to the explosion. The subsequent discharge of EMP radiation caused the remaining the droids to shut down, along with every form of machinery within proximity of the overall blast.

Though the experimental bomb succeeded in neutralizing the entire Separatist invasion force in one fell swoop, the surface began to collapse as a result of the explosion, creating a massive sinkhole that began at ground zero and expanded in every direction. A rescue operation soon commenced in order to search for the Republic troops who fell into the sinkhole. After losing communication with the rescue party, Windu and Ponds led a team to ascertain the fate of the survivors. Their investigation ultimately led them to discovering the Zillo Beast —an ancient creature native to Malastare, its species was long believed to be extinct by the Dug population.

The beast, awoken by the bomb, chased after Windu and his troops until Skywalker created a distraction by flying maneuvers around it in his Jedi starfighter.

After escaping from the sinkhole, Windu regrouped with Skywalker and Urus in order to develop a strategy to neutralize the Zillo Beast. The Malastarian doge was adamant that the creature which he regarded as a "dangerous bloodthirsty monster" should be destroyed—a plan which Palpatine supported in order to ensure the Dugs' cooperation with the Republic's needs for Malastare's fuel.

Windu strongly objected on the ground of Jedi morality, however. Due to the possibility that the beast could be the last of its species, the Jedi Master was determined to preserve its life. His value for life ultimately conflicted with Urus' insistence on the creature's extermination.

Urus went ahead with his plan upon discovering the harmful effects that Malastarian gas had on the Zillo Beast, prompting Windu to intercede in defense of the creature's life by threatening the doge with his lightsaber. The situation was ultimately resolved when a group of Republic RX Falchion -class assault tanks concentrated their fire on the Zillo Beast and, as a result, incapacitated the creature.

The Dugs believed that the beast was finally dead when in fact the stun cannons merely rendered it unconscious—long enough for Republic forces to transport the Zillo Beast to Coruscant for scientific research.

Though the Dug Council formally ratified Malastare's treaty with the Republic, [37] Windu made no effort to conceal his disapproval of Palpatine's decision to bring the dangerous beast to the galactic capital—a move that the Jedi Master regarded as folly on the Chancellor's part.

Windu, the Jedi and their clone troopers were forced to destroy the Zillo Beast during its rampage on Coruscant. Windu returned to Coruscant with the sedated Zillo Beast in tow. As the clone army transported the beast to the Republic Science and Technical Center , Windu again expressed his disapproval of Palpatine's decision to move a dangerous creature to the capital.

By then, however, it was clear to him that the Chancellor would not listen to the Jedi Master's counsel on this matter. Palpatine claimed that the research conducted on the Zillo Beast would be beneficial to the Republic war effort, although his reassurance did little to alleviate Windu's concerns about the safety of Coruscant.

Shortly after its arrival, however, the Zillo Beast escaped from its confinement and proceeded to rampage through the cityscape of the galactic capital. Windu and the other Jedi mobilized Republic forces in order to prevent the beast from causing more damage and casualties on Coruscant. Palpatine, who had ordered the beast's destruction, was caught in its path while attempting to evacuate the Senate Office Building. Windu and the Jedi consequently focused their efforts on saving the Chancellor's life, which ultimately led to the death of the Zillo Beast when Palpatine ordered the Republic gunships to fire Malastarian gas bombs on it.

Due to the lack of proof, however, Windu and the Jedi Council instructed Skywalker to recruit Senator Amidala as a spy , believing that their former relationship would enable the Naboo politician to gain the alleged traitor's confidence. Ultimately, the Council was right to be suspicious of Clovis as Amidala discovered proof that her colleague had secretly dealt with the Separatists on behalf of the InterGalactic Banking Clan while pretending to be a Republic loyalist.

Windu personally oversaw the defense of Dantooine against oppositional forces that sought to wrest control of the planet from the Republic.

The Jedi Master's forces prevented the fall of Dantooine to enemy control, but also sustained a large number of casualties in the process. After the battle Windu sent a distress signal, which Ki-Adi-Mundi received shortly after the Republic's reconquest of Geonosis , informing the Jedi of his victory while simultaneously requesting medical supplies for his injured soldiers. Trapped aboard the wreck of the Endurance , Windu and Skywalker were forced to wait for R2-D2 to return with help.

As the war progressed, Boba Fett conspired to assassinate Windu out of vengeance for the death of father, the clone template Jango Fett. However, the Jedi Master was called away mere seconds before the bomb was triggered, resulting in the death of a clone trooper. As the Endurance crew searched the vessel for Windu's would-be assassin, the rogue clone amended his plan by sabotaging the Star Destroyer 's reactor core , causing the starship to crash into the surface of the planet Vanqor.

After escaping the doomed vessel, Windu and Skywalker's search for survivors led them to an escape pod that contained the cadets with the exception of Fett, whom Sing retrieved in Slave I prior to the Jedi's arrival.

In the aftermath of the destruction of the Endurance , Windu and Skywalker traveled to the crash site hoping to find survivors—including Admiral Kilian and CT, both of whom opted to remain with the ship as it went down. During the search, Windu chastised Skywalker for encouraging individuality in his droid, the astromech unit R2-D2. Before long, the Jedi generals discovered several dead clones along with signs that they had survived the crash only to be executed shortly after.

On the bridge Skywalker discerned a Mandalorian helmet in the rubble. At that moment, Windu remembered both Jango and Boba Fett, leading the Jedi Master to realize that it was the latter who attempted to assassinate him. Although Windu was unable to prevent Skywalker from triggering the bomb within the helmet, he succeeded in saving the younger Jedi's life by pulling him away from the explosion through the Force. The blast caused even more damage to bridge, however, leaving both men trapped and injured under a large pile of debris.

Unable to escape on their own, Skywalker instructed R2-D2 to relay their situation to the Jedi Temple. Windu, on the other hand, expressed little faith in the droid's ability to succeed. As they lay trapped and waiting for the droid to return with help, Windu began to reflect on his actions at the Battle of Geonosis, particularly his victory over Jango Fett and how Boba witnessed his father's death at Windu's hand. Ultimately, Skywalker's droid returned with a rescue party—consisting of Plo Koon , Ahsoka Tano, and the clone troopers of Wolfpack —and managed to save both Jedi just prior to the full collapse of the Endurance bridge.

Before returning to Coruscant, Windu praised R2-D2 for saving his life, much to Skywalker's surprise. Windu had no intention of seeking retribution for the attempt on his life—until he learned that Boba Fett's allies had taken hostages to force the Jedi's hand. After returning to the Republic capital, Windu and Skywalker recuperated at the Jedi Temple where they initially argued over their next course of action in light of Fett's attempt on their lives.

Although Skywalker insisted that the Jedi should hunt the renegade clone and bring him to justice, Windu was content to let the matter go, preferring to not become entangled in a vendetta as Fett was against him.

A transmission from Aurra Sing, who revealed the hostages she took from the Endurance , changed the Jedi Master's mind. Windu decided to confront Fett and his accomplices upon witnessing Sing's execution of CT, but due to his injuries he allowed Koon and Tano to go in his stead. Their mission was a success, resulting in Fett's arrest and the rescue of the remaining hostages.

On Coruscant, Windu confronted Fett in person, who regretted his actions on the Endurance , but refused to forgive the Jedi for Jango's death. Following Fett's arrest, Windu attended the funeral of the Rodian senator Onaconda Farr , who was assassinated by his personal aide , Lolo Purs. Later in the war, the Jedi Council received a holorecording of the Devaron massacre. Windu informed his colleague that the Zabrak in the recording was not the Sith Lord he fought on Naboo.

He further explained that the Zabrak and Maul were Dathomirians of Dathomir , not Iridonia as they previously believed in Maul's case. With Kenobi's aid, Windu and Skywalker intercepted the bounty hunters before they could escape with their valuable hostage. When rumors reached the Council that the bounty hunter Moralo Eval was planning to abduct Chancellor Palpatine despite his incarceration at the Republic Judiciary Central Detention Center , Windu, Yoda, and Kenobi conceived a plan for Kenobi to infiltrate Eval's operation by impersonating the bounty hunter Rako Hardeen.

Windu arranged for Skywalker to arrest Kenobi, posing as Hardeen, and have sent to prison. He was then informed that fellow bounty hunter Cad Bane was planning to free Eval. The bounty hunters executed their plan during the ceremony, disabling the ray shield and kidnapping Palpatine. Through Kenobi's intervention, however, Windu and Skywalker were able to apprehend Bane and Eval before they could escape with their prisoner.

Following the a terrorist explosion in a hangar of the Jedi Temple, the Council recalled Skywalker and his apprentice to Coruscant. After briefing the two Jedi on the situation, Windu and Yoda assigned them to oversee the Jedi Order's internal investigation. In addition, they suspected that the attack was caused by a rogue Jedi.

As neither Skywalker or Tano were present at the time of the bombing, Windu and the Grand Master considered them above suspicion and therefore suited to the task. During the investigation, Skywalker and Tano reported directly to Windu, who informed them that a swift conclusion to the case was imperative as rumors began to circulate within the Senate that the military police could become involved.

With the arrest of Letta Turmond , Windu and Yoda concluded that the [49] radical [50] Coruscanti was the main culprit in the bombing of the Temple hangar.

While there was no indication at the time of a Jedi's involvement, the incident served to fuel anti-Jedi sentiment among the Republic citizenry—an outcome that concerned Windu. In the aftermath of Turmond's arrest, Windu attended a funeral ceremony to honor the six Jedi Knights who were killed in the hangar blast.

Shortly thereafter, Skywalker's Padawan came under suspicion of being the true mastermind behind the bombing after Turmond was Force-choked to death in her presence.

The Council endeavored to apprehend the fugitive Padawan, although Windu was concerned by Yoda's decision to send Skywalker after his own apprentice, believing that his emotional connection to Tano would complicate the mission. The hunt for Tano led to her capture and subsequent confinement in the Jedi Temple. As the Council debated on what to do with her, Tarkin contacted them on the Senate's behalf, imploring the Jedi leadership to expel Tano and surrender her to military custody.

Tano pleaded innocent and insisted that the Council was being deceived; but as she was unable to confirm the identity of the true perpetrator, Windu announced the Council's decision to revoke Tano's Jedi status and hand her over to the military custody of the Republic. Although Windu proclaimed Tano a greater Jedi because of her ordeal, the former Padawan chose to walk away from the Jedi Order. After the expulsion was completed, Windu attended Tano's military trial alongside several other members of the Council.

Before the verdict could be read, however, Skywalker burst in and revealed the real traitor, Barriss Offee , who confessed to the crimes that Tano had been accused of and scathingly claimed that the Jedi were the ones responsible for the Clone War. Due to this revelation, Windu and the Council attempted to make amends with Tano.

In addition to a personal apology from Skywalker, Plo Koon informed Tano that she had the Council's most humble apologies.

But while Windu and his colleagues were prepared to accept her back into the Order with a promotion to the rank of Jedi Knight, Tano refused the offer and instead chose to leave the Temple to search for a new path.

However, Windu's presence was not welcome by the Queen nor the Bardottans, due to a long-standing mistrust of the Jedi by the Dagoyans. Windu also sensed that the Force was out of balance on Bardotta. However, when the queen disappeared, Windu assisted the Bardottans and Binks in their search in the catacombs belonging to the Frangawl Cult. When Binks disappeared, Windu tracked him down and rescued Binks from being sacrificed.

However, the Frangawl cult leader escaped with queen off-world. Binks promised the Bahk-tov Council that they would find the queen before the prophecy came to be. Windu learned from Binks that the Frangawl cult was extracting the living force from Dagoyan masters, and putting it into a sphere. He surmised that they would do same to Queen Julia. Windu then sensed the orb on Zardossa Stix where Windu sensed her in a city market square. Windu fought with several of the cultists and saved Binks from capture, then stunning one Gundark and killing another.

Windu questioned the Gundarks' trainer, who told them that the mysterious " Great Mother " would deal with him. Windu and Binks took an eopie and a dalgo to help in their search, traveling to the Zardossan temple.

However, Windu and Binks were then confronted by stone guardians , yet Windu was able to defeat them. With Binks's help, Windu was able to prevent Talzin from absorbing the sphere's power and watched as she disappeared.

Responding to a mysterious distress call, Plo Koon discovered a crashed Jedi shuttle, and found the lightsaber of Sifo-Dyas in the wreckage to the surprise of the High Council.

Sifo-Dyas' lightsaber had been lost since his death a decade prior to the Clone Wars; Skywalker and Kenobi were sent to investigate, which led them to discover that Sifo-Dyas had, in fact, been murdered by Pyke criminals rather than the native Felucians he had been sent to negotiate with, as the Council had previously assumed. Furthermore, they learned that the Pykes had been acting on orders from Count Dooku. A confrontation between Dooku and the Jedi on the Oba Diah moon led the Order to discover that Dooku was the mysterious Tyranus who hired Jango Fett as the clone template, making him responsible for the clone army's creation.

Anakin Skywalker : Yes, the one we've been looking for. Mace Windu : How do you know this? Anakin Skywalker : He knows the ways of the Force. He told me himself. He's been trained to use the Dark Side. Mace Windu : Are you sure? Anakin Skywalker : Absolutely. Mace Windu : Then our worst fears have been realized. We must move quickly if the Jedi Order is to survive.

Anakin Skywalker : Master, the Chancellor is very powerful and dangerous. You'll need my help if you're going to arrest him. Mace Windu : For your own good, stay out of this affair. I sense a great deal of confusion in you, young Skywalker. There is much fear that clouds your judgment. Anakin Skywalker : I must go, Master. Mace Windu : No! If what you've told me is true, you will have gained my trust. But for now, remain here. Wait in the Council chamber until we return.

Anakin Skywalker : Yes, Master. Supreme Chancellor : [speaking to Anakin Skywalker] Anakin. I told you it would come to this! I was right! The Jedi are taking over! Mace Windu : The oppression of the Sith will never return! Your plot to regain control of the Republic has failed! It's over! You have lost! Supreme Chancellor : [speaking as Darth Sidious] No Yoda : Allow this appointment lightly, the Council does not.

Disturbing, is this move by Chancellor Palpatine. Anakin Skywalker : I understand.